SNP Profiles matching EQX /O [CHA]

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_Input profile	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	CT
1._GC-07-077-4-21	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	CT
2._RUQ_1436	_	GG	GG	CC	_	_	_	TT	_	_	_	_	CC	_
3._EET_272_[ECU]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
4._GC-03-032-3-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
5._EET_272_[ECU]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
6._GC-03-032-3-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
7._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
8._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
9._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
10._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
11._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
12._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
13._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
14._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	CT
15._RUQ_32	_	GG	CG	CT	_	_	_	TT	_	_	_	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
1._GC-07-077-4-21	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
2._RUQ_1436	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CC	AC	AA
3._EET_272_[ECU]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
4._GC-03-032-3-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
5._EET_272_[ECU]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
6._GC-03-032-3-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
7._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
8._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
9._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
10._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
11._GC-01-034-2-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
12._GC-01-034-2-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
13._GC-01-034-2-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
14._GC-01-034-2-11	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC	AA
15._RUQ_32	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CT	AC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X	X_X
1._GC-07-077-4-21	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X	X_X
2._RUQ_1436	_	AA	CC	AG	CC	AC	CC	GG	CC	_	_	X_X	X_X	X_X
3._EET_272_[ECU]	GG	AA	CC	AG	CC	_	CC	GG	CC	AT	GG	X_X	X_X	X_X
4._GC-03-032-3-11	GG	AA	CC	AG	CC	_	CC	GG	CC	AT	GG	X_X	X_X	X_X
5._EET_272_[ECU]	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
6._GC-03-032-3-11	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
7._PA_150_[PER]	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
8._PA_150_[PER]	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
9._PA_150_[PER]	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
10._PA_150_[PER]	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
11._GC-01-034-2-11	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
12._GC-01-034-2-11	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
13._GC-01-034-2-11	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
14._GC-01-034-2-11	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X	X_X
15._RUQ_32	_	AA	CC	AG	CC	AC	CC	GG	CC	_	_	X_X	X_X	X_X

Input profile: EQX_/O_[CHA]

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Mars Center for Cocoa Science, Brazil

Location: 7421 2

Dapeng Zhang, 2016

1._EQX_/O_[CHA] GC-07-077-4-21

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._MOQ_6_/95 RUQ_1436

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._EET_272_[ECU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3311 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._EET_272_[ECU] GC-03-032-3-11

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._EET_272_[ECU]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3311 8

Dapeng Zhang, 2016

6._EET_272_[ECU] GC-03-032-3-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

7._PA_150_[PER]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 7 > FP

Dapeng Zhang, 2016

8._PA_150_[PER]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 10

Dapeng Zhang, 2016

9._PA_150_[PER]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 3

Dapeng Zhang, 2016

10._PA_150_[PER]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._PA_150_[PER] GC-01-034-2-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._PA_150_[PER] GC-01-034-2-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._PA_150_[PER] GC-01-034-2-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

14._PA_150_[PER] GC-01-034-2-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._PA_56_[PER] RUQ_32

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25